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The Open Protein Structure Annotation Network
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1mk4

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title 1.7A crystal structure of a hypothetical protein yqjY from Bacillus subtilis. To be Published
    Site MCSG
    PDB Id 1mk4 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS4541,P54562, 1423
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.10 Rfactor 0.22
    Waters
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    Solvent Content 60.30

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1mk4
    1. Comparative modeling in CASP5: progress is evident, but alignment errors remain a significant hindrance
    _ Venclovas - Proteins: Structure, Function, and Bioinformatics, 2003 - Wiley Online Library
     
    2. An iterative knowledge_based scoring function for proteinprotein recognition
    SY Huang, X Zou - Proteins: Structure, Function, and , 2008 - Wiley Online Library
     
    3. A less laborious approach to the high-throughput production of recombinant proteins in Escherichia coli using 2-liter plastic bottles
    C Sanville Millard, L Stols, P Quartey, Y Kim - Protein expression and , 2003 - Elsevier
     
    4. CASP5 target classification
    LN Kinch, Y Qi, TJP Hubbard - : Structure, Function, and , 2003 - Wiley Online Library
     
    5. Structural characterization of proteins using residue environments
    SD Mooney, MHP Liang, R DeConde - PROTEINS: Structure, , 2005 - Wiley Online Library
     
    6. A structural pattern_based method for protein fold recognition
    WR Taylor, I Jonassen - PROTEINS: Structure, Function, and , 2004 - Wiley Online Library
     
    7. Sampling of near_native protein conformations during protein structure refinement using a coarse_grained model, normal modes, and molecular dynamics simulations
    AW Stumpff_Kane, K Maksimiak - Proteins: Structure, , 2008 - Wiley Online Library
     
    8. Are structural biases at protein termini a signature of vectorial folding?
    A Laio, C Micheletti - PROTEINS: Structure, Function, and , 2006 - Wiley Online Library
     
    9. Aromatic-Aromatic Interactions Database, A2ID: An Analysis of Aromatic [pi]-Networks in Proteins
    M Chourasia, GM Sastry, GN Sastry - International Journal of Biological , 2011 - Elsevier
     
    10. A fold-recognition approach to loop modeling
    C Levefelt, D Lundh - Journal of molecular modeling, 2006 - Springer
     
    11. Stochastic pairwise alignments and scoring methods for comparative protein structure modeling
    AC Marko, K Stafford, T Wymore - Journal of chemical information , 2007 - ACS Publications
     
    12. Conformational Sampling in Structure Prediction and Refinement with Atomistic and Coarse-Grained Models
    M Feig, SM Gopal, K Vadivel - Multiscale Approaches to , 2011 - Springer
     
    13. Protein Structure Prediction Using an Augmented Homology Modeling Method: Key Importance of Iterative-Procedures for Obtaining Consistent Quality Models
    S McDonald, S Mylvaganam - Current , 2005 - ingentaconnect.com
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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