The Open Protein Structure Annotation Network
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    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of Bacillus subtilis YckF: structural and functional evolution. J.Struct.Biol. 148 98-109 2004
    Site MCSG
    PDB Id 1m3s Target Id APC1056
    Molecular Characteristics
    Source Bacillus subtilis
    Alias Ids TPS4489,P42404, 1423 Molecular Weight 19961.80 Da.
    Residues 185 Isoelectric Point 5.82
    Sequence mktteyvaeilnelhnsaayisneeadqladhilsshqiftagagrsglmaksfamrlmhmgfnahivg eiltpplaegdlviigsgsgetkslihtaakakslhgivaaltinpessigkqadliirmpgspkdqsn gsyktiqpmgslfeqtlllfydavilklmekkgldsetmfthhanle
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 2
    Resolution (Å) 1.95 Rfree 0.22493
    Matthews' coefficent 2.30 Rfactor 0.18708
    Waters 205 Solvent Content 46.45

    Ligand Information


    Google Scholar output for 1m3s
    1. The many faces of the helix_turn_helix domain: Transcription regulation and beyond_
    L Aravind, V Anantharaman, S Balaji - FEMS microbiology , 2005 - Wiley Online Library
    2. Assessment of homology_based predictions in CASP5
    A Tramontano, V Morea - Proteins: Structure, Function, and , 2003 - Wiley Online Library
    3. Prediction of protein loop conformations using the AGBNP implicit solvent model and torsion angle sampling
    AK Felts, E Gallicchio, D Chekmarev - Journal of chemical , 2008 - ACS Publications
    4. Toward better refinement of comparative models: predicting loops in inexact environments
    BD Sellers, K Zhu, S Zhao, RA Friesner - Proteins: Structure, , 2008 - Wiley Online Library
    5. CASP5 target classification
    LN Kinch, Y Qi, TJP Hubbard - : Structure, Function, and , 2003 - Wiley Online Library
    6. Sampling of near_native protein conformations during protein structure refinement using a coarse_grained model, normal modes, and molecular dynamics simulations
    AW Stumpff_Kane, K Maksimiak - Proteins: Structure, , 2008 - Wiley Online Library
    7. A fold-recognition approach to loop modeling
    C Levefelt, D Lundh - Journal of molecular modeling, 2006 - Springer
    8. A seqlet-based maximum entropy Markov approach for protein secondary structure prediction
    Q Dong, X Wang, L Lin, Y Guan - Science in China Series C: Life Sciences, 2005 - Springer
    9. Crystal structure of Bacillus subtilis YckF: structural and functional evolution
    R Sanishvili, R Wu, DE Kim, JD Watson - Journal of structural , 2004 - Elsevier
    10. Structure prediction and functional analysis of KdsD, an enzyme involved in lipopolysaccharide biosynthesis
    S Sommaruga, LD Gioia, P Tortora, A Polissi - Biochemical and biophysical , 2009 - Elsevier
    11. Stochastic pairwise alignments and scoring methods for comparative protein structure modeling
    AC Marko, K Stafford, T Wymore - Journal of chemical information , 2007 - ACS Publications
    12. Conformational Sampling in Structure Prediction and Refinement with Atomistic and Coarse-Grained Models
    M Feig, SM Gopal, K Vadivel - Multiscale Approaches to , 2011 - Springer
    13. Crystal structure of YfeU protein from Haemophilus influenzae: a predicted etherase involved in peptidoglycan recycling
    Y Kim, P Quartey, R Ng, TI Zarembinski - Journal of structural and , 2009 - Springer
    14. Crystal structure of 3_hexulose_6_phosphate synthase, a member of the orotidine 5__monophosphate decarboxylase suprafamily
    I Orita, A Kita, H Yurimoto, N Kato - Proteins: Structure, , 2010 - Wiley Online Library
    15. Protein Structure Prediction Using an Augmented Homology Modeling Method: Key Importance of Iterative-Procedures for Obtaining Consistent Quality Models
    S McDonald, S Mylvaganam - Current , 2005 - ingentaconnect.com
    16. Towards High-resolution Computational Approaches for Structure-based Drug Discovery
    J Li - 2011 - academiccommons.columbia.edu

    Protein Summary

    Ligand Summary




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