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The Open Protein Structure Annotation Network
PDB Keyword
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3cvj

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of putative phosphoheptose isomerase (NP_244191.1) from Bacillus halodurans at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 3cvj Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1730,NP_244191.1, 3.40.50.10490
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 4
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.02 Rfactor 0.174
    Waters
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    Solvent Content 39.16

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3cvj
    1. Crystal structure of YfeU protein from Haemophilus influenzae: a predicted etherase involved in peptidoglycan recycling
    Y Kim, P Quartey, R Ng, TI Zarembinski - Journal of structural and , 2009 - Springer
     

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    Protein Summary

    Gene BH3325 from Bacillus halodurans encodes the NP_244191 amino acid sequence that shows a weak hit (E-val=1.2e-3) with the Sugar Isomerase group (PF01380). A functional link (score 0.7) is made by genome context analysis with the glucose-1-phosphate thymidyl-transferase BH3324. 

    Pre-SCOP classifies 3cvj in the alpha/beta class, SIS domain superfamily. 3cvj structure belongs to the alpha beta class having 3-layer (abc) sandwich architecture. There are four molecules in asu as shown below. The predicted biological molecule is a dimer supported by SEC/SLS. A Mg ion is coordinated by the side chains of His-53 and Glu-57 from both chains A and B. 

    DALI top hits (Z=19) for a 3cvj structural similarity search are phosphoheptose isomerases

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    ,
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    and the hypothetical protein HI0754
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    . Superposition with the SSM best hit (
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    - phosphoheptose isomerase; Z=18) with 3cvj is shown below.


     

    Ligand Summary

    Magnesium (Mg) and acetate (ACT) ions from crystallization and ethylene glycol (EDO)
    from cryo condition were modeled.


    References

    Reviews

    References

     

    No references found.

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