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The Open Protein Structure Annotation Network
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3ceb

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of D-aminoacid Aminotransferase-Like PLP-Dependent Enzyme (YP_718332.1) from Haemophilus somnus 129PT at 2.40 A resolution. To be published
    Site JCSG
    PDB Id 3ceb Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1701,YP_718332.1, _0017.002340_
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 4.65 Rfactor 0.186
    Waters
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    Solvent Content 73.57

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3ceb
    1. PURIFICATION OF LYSINE DECARBOXYLASE: A MODEL SYSTEM FOR PLP ENZYME INHIBITOR DEVELOPMENT AND STUDY
    LC Zohner - 2011 - digitalcommons.unl.edu
     

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    Protein Summary

    Gene HS_0128 from Haemophilus somnus 129pt translates into the YP_718332 amino acid sequence, which has sequence similarity to those in the amino transferase class 4 group ( aminotran_4 (PF01063) family ) ( FFAS score: -46.500). Analysis of HS_0128 genome context indicates the presence of an amino deoxychorismate synthase subunit I (pabB, HS_0129) as putative functional partner.

    3ceb belongs in the D-aminoacid aminotransferase-like PLP-dependent enzymes (super)family from SCOP. DALI top hit are with the 4-amino 4-deoxy chorismate lyase

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    (Z=18), 4-amino-4-deoxychorismate lyase
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    ; Z=17), or the d-amino acid aminotransferase (
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    ; Z=17).  3ceb consists of two domains (1-82 and 83-203). The biomolecule of this target should be a monomer based on interface interaction calculation. A pyridoxyal-5'-phosphate (PLP) molecule has been built in current model covalently bound to Lys 102, which is in a pocket of the C-terminal domain around the domain interface.

    3ceb consists of two domains: N-terminal domain (Magentas: 1 -82) and C-terminal domain (Green: 83-293). One PLP molecule is found covalently bonded to Lys 102 from the C-terminal domain.

    Ligand Summary

    Ligands: LYSINE PYRIDOXAL-5'-PHOSPHATE 


    References

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