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The Open Protein Structure Annotation Network
PDB Keyword
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3bkw

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of S-adenosylmethionine dependent methyltransferase (NP_104914.1) from Mesorhizobium loti at 1.60 A resolution. To be published
    Site JCSG
    PDB Id 3bkw Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1744,NP_104914.1, 104890
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.21 Rfactor 0.171
    Waters
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    Solvent Content 44.41

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3bkw

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    Protein Summary

    The Mll3908 gene (PF08241 ,cd02440,cl12011) from Mesorhizobium loti MAFF303099 encodes for a methyltransferase (EC:2.1.1.12) which utilizes S-adenosylmethionine (SAM) as a donor for a methyl group to be added either at some nitrogen, oxygen or carbon atom. The structure adopts a Rossman fold (cf. SCOP, CATH). It is interesting to notice that this type of enzyme is also dependent on Mn2++ or Zn2++. Structurally similar proteins determined by the PSI include 3g5l (43% sequence identity over 203 structurally aligned residues, results obtained by TopMatch), 1vl5, 1xxl and many more since Rossman folds are very abundant.

    Todo: Possible improvement of this annotation: Do these Mn/Zn ions appear in the electron density?

    Ligand Summary



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