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The Open Protein Structure Annotation Network
PDB Keyword
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3bdv

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of YdeN-like protein of unknown function (DUF1234) (YP_051181.1) from Erwinia carotovora subsp. atroseptica SCRI1043 at 1.66 A resolution. To be published
    Site JCSG
    PDB Id 3bdv Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1736,YP_051181.1, 104410
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 1.96 Rfactor 0.170
    Waters
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    Solvent Content 37.15

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3bdv
    1. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     
    2. CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site annotation
    GH Li, JF Huang - BMC bioinformatics, 2010 - biomedcentral.com
     

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    Protein Summary

    The ECA3091 gene from Erwinia carotovora atroseptica scri1043 encodes the YP_051181, a member of the DUF1234 group (

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    ).

    3bdv structure adopts an alpha/beta hydrolase fold (

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    ) and superfamily inside the alpha/beta class. According to DALI, 3bdv shows significant similarity to other homolog structures determined by structural genomics (PDB id:
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    [Z=17],
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    [Z=19],
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    [Z=14],
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    , and others annotated as esterases (Z=16) like
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    ,
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    and
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    .

    Analysis performed on a homologous and structurally similar hydrolase suggests this protein might be an esterase/lipase active on a soluble ester or small lipid [Ref].

    Ligand Summary


    References

    Reviews

    References

     

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