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3bde

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of domain of unknown function with a ferredoxin-like fold (NP_106155.1) from Mesorhizobium loti at 1.79 A resolution. To be published
    Site JCSG
    PDB Id 3bde Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1721,NP_106155.1, 3.30.70.900, 336077
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.00 Rfactor 0.177
    Waters
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    Solvent Content 38.53

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3bde
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    2. A discrete view on fold space
    MJ Sippl, SJ Suhrer, M Gruber, M Wiederstein - Bioinformatics, 2008 - Oxford Univ Press
     
    3. Crystal structure and catalytic mechanism of 4-methylmuconolactone methylisomerase
    M Marn, DW Heinz, DH Pieper, BU Klink - Journal of Biological Chemistry, 2009 - ASBMB
     

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    Protein Summary

    Gene mll5499 from Mesorhizobium loti encodes protein NP_106155 with primary sequence similarity to the Dabb family (PF07876).

    3bde structure shows a ferredoxin-like fold belonging to the dimeric alpha+beta barrel superfamily from SCOP.

    DALI top hit using 3bde as query is with the ferredoxin-like protein 3bn7 (Z-scr=14).

    Ligand Summary



    References

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