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The Open Protein Structure Annotation Network
PDB Keyword
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3bcw

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of domain of unknown function with a RmlC-like cupin fold (NP_887725.1) from Bordetella bronchiseptica at 1.60 A resolution. To be published
    Site JCSG
    PDB Id 3bcw Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1728,NP_887725.1, 2.60.120.10, 92106
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.56 Rfactor 0.167
    Waters
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    Solvent Content 51.87

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3bcw
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     

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    Protein Summary

    Gene BB1179 from Bordetella bronchiseptica encodes the NP_887725 protein that belongs to the DUF861 group (PF05899) and folds into a RmlC-like cupin fold. 

    Structurally, according to DALI, 3bcw is quite similar to 3es4 (Z=15) and to another structure solved by JCSG: a putative acetyl/propionyl-CoA carboxylase, alpha subunit (ZP_00243239.1) from Rubrivivax gelatinosus PM1 (PDB code: 2o1q; Z=12).  However, 3bcw and 2o1q only share 6.2% sequence identity.  3bcw structure is also similar to yet another JCSG structure: a novel Thermotoga maritima enzyme (TM1112) from the cupin family (PDB code: 1o5u; Z=10).  While the similar regions of these two proteins are shorter (FFAS aligns residues 43-119 of this structure to residues 20-95 of 1o5u, FATCAT aligns residues 50-120 from this structure to residues 21-95 from 1o5u), there is much more sequence conservation (26% in the FFAS alignment and 28.57% in the FATCAT alignment).

    Ligand Summary



    References

    Reviews

    References

     

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