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The Open Protein Structure Annotation Network
PDB Keyword
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3b2y

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of metallopeptidase containing co-catalytic metalloactive site (YP_563529.1) from Shewanella denitrificans OS217 at 1.74 A resolution. To be published
    Site JCSG
    PDB Id 3b2y Target Id 375165
    Molecular Characteristics
    Source Shewanella denitrificans os217
    Alias Ids TPS1651,YP_563529.1, 3.40.630.10, 92218 Molecular Weight 30303.43 Da.
    Residues 274 Isoelectric Point 5.26
    Sequence mtsrspfesfvwqseifncqsndidafyaqlaeevnrlglkkntlgsvdsfainlyqsasqrsdlpsll issgfhgeeaagpwgmlhflrglqpalfervnlsllplvnptgfkaghrfnrfgenpnrgftlengkpt pnehtslegklllehaqllcaasrdgiltchedvlmnetyvysfeptqtpgrfslglrdalgqyfklak dgfidecpvtdgvifnhfdtsfeaflvrsgaklaacsetpgqedfdrrvqansaamgqfiahcapil
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 2
    Resolution (Å) 1.74 Rfree 0.215
    Matthews' coefficent 2.02 Rfactor 0.175
    Waters 230 Solvent Content 38.98

    Ligand Information
    Ligands
    Metals

    Jmol

     
    Google Scholar output for 3b2y

    Protein Summary

    Gene Sden_2526 from Shewanella denitrificans os-217 encodes the YP_563529 metallopeptidase containing a Ni metal in its putative active site. YP_563529.1 sequence belongs to the PF04952 family.

    SCOP classifies 3b2y inside the alpha/beta class, phosphorylase/hydrolase-like fold, Zn-dependent exopeptidase superfamily. A Ni metal is observed in the structure chelated by the side chains of conserved residues H75, E78 and H169. Close structural similarity is observed with 3ieh and 2qvp.

    Ligand Summary



    References

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