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2rkh

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of a putative AphA-like transcription factor (ZP_00208345.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 2rkh Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1703,MMAG_12JAN01_CONTIG3800_REVISED_GENE1537, 336990
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.55 Rfactor 0.212
    Waters
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    Solvent Content 51.85

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2rkh
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     

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    Protein Summary

    The Magn03008610 gene from Magnetospirillum magnetotacticum ms-1 encodes a two-domain, all-alpha protein of unknown function. There are no PfamA entries for this protein but HHPred strongly suggests homology with the transcriptional activator PadR-like family (PF03551, P-value 7.3E-31, residues 7-91) and a virulence C-terminal domain (PF10400, P-value 1.8E-14, residues 101-179). This function is supported by structural similarity (PDB id: 1YG2, FATCAT P-value 1.10e-08). 

     

    Of note, this gene is elsewhere described as an alanyl-tRNA synthetase (COG0013, EC 6.1.1.7) in what is likely a misannotation.

    Ligand Summary


    References

    Reviews

    References

     

    No references found.

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