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2re7

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of General Stress Protein COG3871 (YP_263493.1) from Psychrobacter arcticus 273-4 at 2.50 A resolution. To be published
    Site JCSG
    PDB Id 2re7 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1750,YP_263493.1, 2.30.110.10
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.39 Rfactor 0.191
    Waters
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    Solvent Content 63.71

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2re7
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    2. Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and tetrapeptidic fragments
    F Pavelcik, J Vaclavik - Acta Crystallographica Section D: Biological , 2010 - scripts.iucr.org
     
    3. The structure of a Xanthomonas general stress protein involved in citrus canker reveals its flavin-binding property
    E Hilario, Y Li, D Niks, L Fan - Acta Crystallographica Section D: , 2012 - scripts.iucr.org
     

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    Protein Summary

    The Psyc_0186 gene from Psychrobacter arcticus 273-4 encodes the YP_263493 protein, a putative pyridoxamine 5'-phosphate oxidase found in all domains of life (PF01243, EC 1.4.3.5).

    The 2re7 structure belongs to the SCOP all beta class, FMN-binding split barrel superfamily, PNP-oxidase like family. According to DALI, 2RE7 shows strong structural similarity (rmsd <2Å, >100 aligned residues) to other structural genomics structures (PDB ids: 2FHQ [Z=18], 2I02 [Z=18], 3EC6 [Z=17], 2ASF [Z=15], 2HQ7 [Z=16], 2HTI [Z=14], 2HTD [Z=13], 2QEA [Z=14], 3DMB [Z=15]) from the same family.

     

     

    To do: check dimerization mode, FMN and substrate binding site conservation, connection to stress/salvage pathways.

    Ligand Summary


    References

    Reviews

    References

     

    No references found.

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