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The Open Protein Structure Annotation Network
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2qe8

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of uncharacterized protein Ava_4197 (YP_324691.1) from Anabaena variabilis ATCC 29413 at 1.35 A resolution. To be published
    Site JCSG
    PDB Id 2qe8 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1660,YP_324691.1, 104205
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.68 Rfactor 0.116
    Waters
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    Solvent Content 54.09

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2qe8
    1. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     
    2. Electrostatic Properties for Protein Functional Site Prediction
    JS Lee, MJ Ondrechen - Protein Function Prediction for Omics Era, 2011 - Springer
     

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    Protein Summary

    The Ava_4197 gene from Anabaena variabilis ATCC 29413 encodes the YP_324691 protein with uncertain function. It shows significant similarity to the major royal jelly protein (MRJP, PF03022). However, 2qe8 is a bacterial protein, therefore the sequence signal must originate from intrinsic features of the propeller fold. Its genome neighbor, Ava_4198, is annotated as a glucan-1,4-alpha-glucosidase.

    The 2qe8 structure, from the all beta class, adopts a six bladed beta propeller fold (2qe8-CATH) belonging to the Ca-dependent phosphotriesterase superfamily. A DALI structural similarity search provides hits with the DRP35 protein 2dso (Z=25), the phosphotriesterase 2gvv (Z=24) and the diisopropylfluorophosphatase 3hli (Z=24). Other proteins with related structure determined by PSI efforts include 2p4o (Z=28), 3hrp (Z=23), 3e5z (Z=22) and 2ghs (Z=23).

    The unknown ligand attached to 2qe8 structure may be a putative substrate. 

    Ligand Summary


    References

    Reviews

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