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2q9r

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of protein of unknown function (YP_001051499.1) from Shewanella baltica OS155 at 1.91 A resolution. To be published
    Site JCSG
    PDB Id 2q9r Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1629,YP_001051499.1, PF04222, 92196
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.57 Rfactor 0.169
    Waters
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    Solvent Content 52.11

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2q9r
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    2. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     

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    Protein Summary

    The Sbal_3149 gene from Shewanella baltica os155 encodes the YP_001051499, a member of the DUF416 group (PF04222, COG3068). The genome context analysis of Sbal_3149 suggests a high probability (score 0.87) of a functional association with histidine kinases (Sbal_3148 gene, a multisensor hybrid histidine kinase), indicating a role in signaling.

    2q9r structure shows strong similarity with another homolog structure determined by the PSI (PDB id: 3F7C, DALI Z-score 20.2 with rmsd 2.2 Å over 168 residues, sequence identity 23%).

     

     

    To do: look more systematically at genome context, search for other functional indicators (e.g. expression array).

    See 3f7c  entry.

    Ligand Summary


    References

    Reviews

    References

     

    No references found.

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