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The Open Protein Structure Annotation Network
PDB Keyword
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2prr

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein (YP_296737.1) from Ralstonia eutropha JMP134 at 2.15 A resolution. To be published
    Site JCSG
    PDB Id 2prr Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1558,YP_296737.1, 92396
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 12
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.65 Rfactor 0.211
    Waters
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    Solvent Content 53.54

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2prr
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    2. Crystal structure of alkyl hydroperoxidase D like protein PA0269 from Pseudomonas aeruginosa: Homology of the AhpD-like structural family
    T Clarke, V Romanov, Y Chirgadze - BMC structural , 2011 - biomedcentral.com
     
    3. Protein Regge Trajectories, Phase Coexistence and Physics of Alzheimer's Disease
    A Krokhotin, AJ Niemi - Arxiv preprint arXiv:1109.1221, 2011 - arxiv.org
     

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    Protein Summary

    Reut_A2532 gene translates into the YP_296737 sequence that belongs to the putative alkylhydroperoxidase AhpD core protein, characterized by the conserved motif C86--C89---H93 of the CarboxyMuconolactone Dehydrogenase group (PF02627). Its genome vicinity contains an alcohol dehydrogenase (YP_727767) detected with a 0.7 scored hit by STRING.

     

    SCOP classifies 2prr in the all alpha class, AhpD-like superfamily, Atu0492-like family. The highest structural similarity is with the putative peroxidases 2oyo, 2pfx and 3c1l. A reliable hit is observed also with 2ouw, the AhpD core enzyme from Rhodospirillum rubrum.

    Ligand Summary


    References

    Reviews

    References

     

    No references found.

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