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The Open Protein Structure Annotation Network
PDB Keyword
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2ppv

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of uncharacterized protein (NP_764104.1) from Staphylococcus epidermidis ATCC 12228 at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 2ppv Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1474,NP_764104.1, PF01933, 90520
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.56 Rfactor 0.171
    Waters
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    Solvent Content 65.48

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2ppv
    1. Molecular insights into the biosynthesis of the F420 coenzyme
    F Forouhar, M Abashidze, H Xu, LL Grochowski - Journal of Biological , 2008 - ASBMB
     

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    Protein Summary

    The SE_0549 gene codifies for the NP_764104.1 uncharacterized protein that belongs to the UPF0052 group (PF01933) which includes the 2-phospho-L-lactate transferase CofD. Based on its genome vicinity, a significant hit (score 0.972) is obtained with NP_764103, a P-loop ATPase containing sequence, member of family PF03668.

     

    SCOP classifies 2ppv in the class alpha/beta, CofD-like superfamily, CofD-like family. The coordinates show the chelation of a phosphate ion by residues P243-F244-I245. The highest structural similarity (FFAS scr=-64; SSM 69%; Dali Z-scr=23; FATCAT P-val=4e-8) is observed with 3cgw, a phosphotransferase from Methanosarcina mazei [Ref]. A second reliable hit is with 2q7x.

    Ligand Summary



    References

    Reviews

    References

     

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