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The Open Protein Structure Annotation Network
PDB Keyword
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2pg4

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of uncharacterized protein (NP_147569.1) from Aeropyrum pernix at 2.21 A resolution. To be published
    Site JCSG
    PDB Id 2pg4 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1622,NP_147569.1, 91745
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.54 Rfactor 0.19797
    Waters
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    Solvent Content 51.50

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2pg4
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     

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    Protein Summary

    The APE_0880a (APES039) gene from Aeropyrum pernix codes for the NP_147569.1 protein, a small polypeptide of 95 amino acids with a weak hit (e-val=0.01) with the winged helix DNA binding domain group (PF07381).

    SCOP classifies this protein in the all-alpha class, winged helix DNA-binding domain superfamily, F93-like family. DALI top hits are with the AF_1382 protein

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    (Z=11) and the putative transcription factor
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    (Z=11). It is suggested this protein is a dimeric bacterial transcription factor of unknown specificity. Taking the dimer gives a very good hit for
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    , a viral winged helix DNA binding protein [Ref].

    Ligand Summary



    References

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    References

     

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