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The Open Protein Structure Annotation Network
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2pfx

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution. To be published
    Site JCSG
    PDB Id 2pfx Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1545,YP_614459.1, 86088
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.49 Rfactor
    Waters
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    Solvent Content 50.67

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2pfx
    1. Autoindexing with outlier rejection and identification of superimposed lattices
    NK Sauter, BK Poon - Journal of Applied Crystallography, 2010 - scripts.iucr.org
     
    2. Distributed structure determination at the JCSG
    H van den Bedem, G Wolf, Q Xu - Section D: Biological , 2011 - scripts.iucr.org
     

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    Protein Summary

    Gene TM1040_2465 from Silicibacter sp. codifies for the YP_614459 sequence that belongs to the CarboxyMuconolactone Decarboxylase, CMD, group (PF02627). It shows 90% identity with the alkylhydroperoxidase AhpD (ZP_05741951). It possesses the conserved sequence motif C85--C88---H92. Analysis of its genome vicinity provides a 0.79 scored hit with the peptidoglycan binding domain protein OmpA/MotB (YP_614458). 

     

    SCOP classifies 2pfx inside the all alpha class, AhpD-like superfamily, Atu0492-like family. It presents a high structural similarity (FFAS scr=-90; Dali Z-scr=27) with the putative peroxidases 2oyo, 2prr and 3c1l.  

    Ligand Summary


    References

    Reviews

    References

     

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