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The Open Protein Structure Annotation Network
PDB Keyword
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2otm

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (NP_717567.1) from Shewanella oneidensis at 1.85 A resolution. To be published
    Site JCSG
    PDB Id 2otm Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1591,NP_717567.1, 92850
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 3
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.71 Rfactor 0.151
    Waters
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    Solvent Content 54.62

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2otm
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     

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    Protein Summary

    Gene SO_1960 from Shewanella oneidensis encodes the NP_717567 protein, a putative endoribonuclease (45% seq. id. with YP_003302408). Its sequence similarity to proteins from COG0251 (putative translation initiation inhibitor from yjgF family) and very weak (e-val=0.0082) to PF01042 (endoribonuclease L-PSP) indicates that this protein may function as an endoribonuclease acting on single-stranded mRNA that inhibits protein synthesis by mRNA cleavage.

    SCOP classifies 2otm in the alpha+beta class, YjgF-like superfamily, YjgF/L-PSP family.

    According to DALI, 2otm shows structural similarity to a protein with unknown function

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    (Z=24),  the TDCF protein
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    (Z=13),  and to the YjgF proteins
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    (Z=13) and
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    (Z=10).

    Ligand Summary



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