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The Open Protein Structure Annotation Network
PDB Keyword
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2od6

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (JCVI_PEP_1096682647733) from an environmental metagenome (unidentified marine microbe), Sorcerer II Global Ocean Sampling experiment at 1.85 A resolution. To be published
    Site JCSG
    PDB Id 2od6 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1510,JCVI_PEP_1096682647733
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 4
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.36 Rfactor 0.197
    Waters
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    Solvent Content 47.89

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2od6
    1. Probing metagenomics by rapid cluster analysis of very large datasets
    W Li, JC Wooley, A Godzik - PLoS One, 2008 - dx.plos.org
     
    2. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     
    3. Protein structural classification and family identification by multifractal analysis and wavelet spectrum
    SM Zhu, ZG Yu, A Vo - Chinese Physics B, 2011 - iopscience.iop.org
     

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    Protein Summary

    The gene ID JCVI_PEP_1096682647733 from an unidentified marine microbe encodes a protein of unknown function. The fold type for its structure (2od6) is assigned as a ferredoxin-like SCOP54861.  However, no significant sequence similarity can be detected with known ferredoxin-like proteins.  

    According to DALI, 2od6 has significant structural similarity with 2op5 (Z-scr=15), 1vqy (Z-scr=11) and the heme degrading protein from M. tuberculosis 3hx9 [Ref] (Z-scr=11). Structurally, 2od6 is rather similar to the C-terminal domain of the aminotransferase-like enzyme 3HT5 (?).

    Ligand Summary



    References

    Reviews

    References

     

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