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The Open Protein Structure Annotation Network
PDB Keyword
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2oc6

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (NP_388456.1) from Bacillus subtilis at 1.75 A resolution. To be published
    Site JCSG
    PDB Id 2oc6 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1525,NP_388456.1, BIG_439, BIG_25, 86270
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.37 Rfactor 0.173
    Waters
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    Solvent Content 48.09

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2oc6
    1. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    2. A structural and functional homolog supports a general role for frataxin in cellular iron chemistry
    W Qi, JA Cowan - Chemical Communications, 2010 - pubs.rsc.org
     

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    Protein Summary

    The ydhG (BSU05750) gene from Bacillus subtilis codes for the NP_388456 protein that belongs to DUF1801 (PF08818) and it has sequence similarity to the uncharacterized COG5646. The ydhG gene has predicted (string.embl.de) functional associations with: iolD (Probable malonic semialdehyde oxidative decarboxylase), E83C (Protein iolC), and E83B (Protein iolB).

    SCOP classifies 2oc6 inside the alpha+beta class, secretion chaperone-like fold, YdhG-like (super)family. DALI top hits are with the BH2032 protein

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    (Z=18),  and the uncharacterized protein
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    (Z=9). FATCAT detects structural similarity to the NADH quinone oxidireductase subunit-I
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    (Z=8).

    A functional similarity to the frataxin family supporting a general cellular role for frataxin-type proteins in cellular iron homeostasis has been proposed [Ref].

    Ligand Summary



    References

    Reviews

    References

     

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