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The Open Protein Structure Annotation Network
PDB Keyword
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2obn

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of Protein of unknown function DUF1611 (YP_324013.1) from Anabaena variabilis ATCC 29413 at 2.30 A resolution. To be published
    Site JCSG
    PDB Id 2obn Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1575,YP_324013.1, PF07755
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 4
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.25 Rfactor 0.175
    Waters
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    Solvent Content 45.39

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2obn
    1. Detection of Functionally Important Regions in
    G Nimrod, M Schushan, DM Steinberg, N Ben-Tal - Structure, 2008 - Elsevier
     
    2. Foldamers: Accomplishments and Goals
    SH Gellman - 2010 - iecb.u-bordeaux.fr
     

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    Protein Summary

    The Ava_3511 gene from Anabaena variabilis atcc 29413 encodes the YP_324013 protein with sequence similarity to the DUF1611 (PF07755, COG3367). PSI-BLAST aligns Ava_3511 with the C-terminal region of the muconate cycloisomerase (ZP_05044433) with an e-val=1e-87, seq.id. 53%, gaps 1%. Analysis of its genome context indicates a likely functional link (score 0.99) with its neighbor Ava_3512, a muconate lactonizing enzyme.

    2obn structure belongs to the alpha/beta class and adopts a P-loop containing nucleoside triphosphate hydrolase fold, inside the same named superfamily, nitrogenase iron protein-like family. According to DALI, 2obn shows significant similarity to another homolog structure determined by structural genomics (PDB id:

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    DALI Z-score 35.8, rmsd 2.5 Å over 316 residues, sequence identity 33%). Next is the nucleotide binding protein
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    (Z=14).

    Ligand Summary



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