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The Open Protein Structure Annotation Network
PDB Keyword
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2iab

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (NP_828636.1) from STREPTOMYCES AVERMITILIS at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 2iab Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1496,NP_828636.1, 90893
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.35 Rfactor 0.178
    Waters
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    Solvent Content 47.28

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2iab
    1. Domain definition and target classification for CASP7
    ND Clarke, I Ezkurdia, J Kopp, RJ Read - Proteins: Structure, , 2007 - Wiley Online Library
     
    2. Reconstruction of Protein Backbone with the alpha-Carbon Coordinates
    JH Wang, CB Yang, CT Tseng - Journal of Information Science , 2010 - etd.lib.nsysu.edu.tw
     
    3. The structure of a Xanthomonas general stress protein involved in citrus canker reveals its flavin-binding property
    E Hilario, Y Li, D Niks, L Fan - Acta Crystallographica Section D: , 2012 - scripts.iucr.org
     
    4. Reconstruction of Protein Backbone with the a-Carbon Coordinates
    JH Wang, CB Yang, CT Tseng - 2007 - asiair.asia.edu.tw
     
    5. Refinement of All-atom Backbone Prediction of Proteins
    HY Chang - 2008 - etd.lib.nsysu.edu.tw
     
    6. In Silico Identification of Epitopes in Mycobacterium avium subsp. paratuberculosis Proteins That Were Upregulated under Stress Conditions
    RB Gurung, AC Purdie, DJ Begg - Clinical and Vaccine , 2012 - Am Soc Microbiol
     

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    Protein Summary

    N-terminal part has sequence similarity to predicted flavin-nucleotide-binding proteins (COG3467) and pyridoxamine 5`-phosphate oxidase protein family (Pfam01243). However, the residues corresponding to FMN-binding cleft are not conserved here indicating that this protein fold (SCOP: FMN-binding split barrel [50474]) is used here to perform functions other then proteins from Pfam01243. Residues in putative FMN-binding cleft are not conserved.

    Analysis of the crystallographic packing of NP_828636 using the PQS server {Henrick, 1998 #73} indicates that a dimer is the biologically relevant form.

    Ligand Summary



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