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The Open Protein Structure Annotation Network
PDB Keyword
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2hdo

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of putative phosphoglycolate phosphatase (np_784602.1) from Lactobacillus plantarum at 1.50 A resolution. To be published
    Site JCSG
    PDB Id 2hdo Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1491,NP_784602.1, 90342
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.00 Rfactor 0.176
    Waters
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    Solvent Content 43.09

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2hdo
    1. Assessment of predictions submitted for the CASP7 function prediction category
    G Lopez, A Rojas, M Tress - : Structure, Function, and , 2007 - Wiley Online Library
     
    2. Research Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution
    MV Omelchenko, MY Galperin, YI Wolf, EV Koonin - 2010 - biomedcentral.com
     
    3. Domain definition and target classification for CASP7
    ND Clarke, I Ezkurdia, J Kopp, RJ Read - Proteins: Structure, , 2007 - Wiley Online Library
     
    4. Reconstruction of Protein Backbone with the alpha-Carbon Coordinates
    JH Wang, CB Yang, CT Tseng - Journal of Information Science , 2010 - etd.lib.nsysu.edu.tw
     
    5. Reconstruction of Protein Backbone with the a-Carbon Coordinates
    JH Wang, CB Yang, CT Tseng - 2007 - asiair.asia.edu.tw
     
    6. Refinement of All-atom Backbone Prediction of Proteins
    HY Chang - 2008 - etd.lib.nsysu.edu.tw
     
    7. Structural biology of the hepatitis C virus proteins
    BM Weiser, TL Tellinghuisen - Drug Discovery Today: Technologies, 2011 - Elsevier
     

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    Protein Summary

    The gene NP_784602.1 from Lactobacillus plantarum encodes a putative phosphoglycolate phosphatase EC:3.1.3.18.  The enzyme belongs to the class of alpha and beta (a+b) proteins and adopts a  HAD-like fold type SCOP56784. The enzyme catalyzes the following reaction: 2-phosphoglycolate + H(2)O <=> glycolate + phosphate.  The enzyme participates in glyoxylate and dicarboxylate metabolism.  The structures of several enzyme homologues from other organisms have been solved: 2YY6Aquifex aeolicus; 1WR8,  Pyrococcus horikoshii

    Ligand Summary



    References

    Reviews

    References

     

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