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The Open Protein Structure Annotation Network
PDB Keyword
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2f4p

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (tm1010) from THERMOTOGA MARITIMA at 1.90 A resolution. To be published
    Site JCSG
    PDB Id 2f4p Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1252,TM1010, 2.60.120.10, 84788, 90095
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 4
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.07 Rfactor 0.16
    Waters
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    Solvent Content 40.23

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2f4p
    1. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     
    2. Crystallization of a novel metal-containing cupin from Acidobacterium sp. and preliminary diffraction data analysis
    A Lyskowski, K Steiner, I Hajnal - Section F: Structural , 2012 - scripts.iucr.org
     

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    Protein Summary

    The TM1010 gene from Thermotoga maritima encodes the NP_228816 protein, a member of the Cupin2 superfamily  PF07883 COG3450.  This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family also includes germins and plant storage proteins [Ref] . Analysis of TM1010 genome context predicts a functional link (score 0.86) TM1009, an oxidoreductase from the aldo/keto reductase family.

    SCOP classifies 2f4p in the double stranded beta helix fold, RmlC-like cupins superfamily, TM1287-like family. A DALI structural similarity search provides hits with the REMF protein

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    (Z=14), a putative oxalate decarboxylase
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    (Z=14), and the TM1459 protein
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    (Z=14).

    Ligand Summary



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