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The Open Protein Structure Annotation Network
PDB Keyword
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2b8m

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution. To be published
    Site JCSG
    PDB Id 2b8m Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1423,1499583, 2.60.120.10, 87276
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 1.91 Rfactor 0.149
    Waters
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    Solvent Content 39.70

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2b8m
    1. Automatic procedure for using models of proteins in molecular replacement
    D Raimondo, A Giorgetti, S Bosi - PROTEINS: Structure, , 2007 - Wiley Online Library
     

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    Protein Summary

    The gene MJ0764 from Methanococcus jannaschii encodes the NP_247749 protein containing a domain from the cupin superfamily PF07883.  The 2b8m structure belongs to the class of all beta proteins and reveals a double-stranded beta-helix (beta-barrel) fold type, inside the RmlC-like cupins superfamily, MJ0764-like family SCOP51181. DALI top hits are with the proteins SPY1581

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    (Z=13),  TTHA0104
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    (Z=13) and the cupin
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    (Z=13). 

    The cupin superfamily of proteins is among the most functionally diverse of any described to date. It was named on the basis of the conserved β-barrel fold (‘cupa’ is the Latin term for a small barrel). The family comprises both enzymatic and non-enzymatic members, which have either one or two cupin domains. Within the conserved tertiary structure, the variety of biochemical function is provided by minor variation of the residues in the active site, and the identity of the bound metal ion [Ref].

    Ligand Summary

     

    References

    Reviews

    References

     

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