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The Open Protein Structure Annotation Network
PDB Keyword
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2afb

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution. Proteins 70 603-608 2007
    Site JCSG
    PDB Id 2afb Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1181,TM0067, 3.40.1190.20, 83936
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.41 Rfactor 0.176
    Waters
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    Solvent Content 48.49

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2afb
    1. Toward the estimation of the absolute quality of individual protein structure models
    P Benkert, M Biasini, T Schwede - Bioinformatics, 2011 - Oxford Univ Press
     
    2. Crystal structure of 2_keto_3_deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 resolution
    II Mathews, D McMullan, MD Miller - Proteins: Structure, , 2008 - Wiley Online Library
     
    3. Applications of Bioinformatics to Protein Structures: How Protein Structure and Bioinformatics Overlap
    GW Han, C Rife, MR Sawaya - Methods in Molecular Biology, 2009 - Springer
     

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    Protein Summary

    The TM0067 gene (PF00294 , cd01166, cl00192) from Thermotoga maritima MSB8 encodes for a 2-dehydro-3-deoxygluconokinase (EC:2.7.1.45) [Ref], a carbohydrate kinase. The protein adopts a three layer alpha/beta/alpha sandwich structure and belongs to the ribokinase-like folds (2afb-SCOP, 2afb-CATH). Similar structures determined by the PSI are 2r3b, 1kyh, and possibly 1vl8.

    This entry supersedes 1j5v.

    Ligand Summary



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