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1zbt

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of Peptide chain release factor 1 (RF-1) (SMU.1085) from Streptococcus mutans at 2.34 A resolution. To be published
    Site JCSG
    PDB Id 1zbt Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1381,SMU.1085, 289705, 89876
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.18 Rfactor 0.221
    Waters
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    Solvent Content 61.03

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1zbt
    1. The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure
    B Vestergaard, S Sanyal, M Roessle, L Mora - Molecular cell, 2005 - Elsevier
     
    2. Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM
    U Rawat, H Gao, A Zavialov, R Gursky - Journal of molecular , 2006 - Elsevier
     
    3. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    4. On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination
    S Panjikar, V Parthasarathy, VS Lamzin - Section D: Biological , 2009 - scripts.iucr.org
     
    5. Peptide release on the ribosome: mechanism and implications for translational control
    EM Youngman, ME McDonald, R Green - Annu. Rev. Microbiol., 2008 - annualreviews.org
     
    6. Release factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies
    G Zoldk, L Redecke, DI Svergun - Nucleic acids , 2007 - Oxford Univ Press
     
    7. NMR structure of the peptidyl_tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide
    KK Singarapu, R Xiao, T Acton, B Rost - Proteins: Structure, , 2008 - Wiley Online Library
     

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    Protein Summary

    The gene SMU.1085 from Streptococcus mutans encodes a domain of peptide chain release factor 1 (RF-1) PF00472.  The protein belongs to the class of multi-domain alpha and beta (a+b) proteins and reveals release factor fold type SCOP75619.  RF1 is a protein that recognizes stop codons UAG and UAA, and promotes the release of a nascent polypeptide from tRNA on the ribosome.  Multiple structures of RF-1 from different organisms have been solved alone (1RQ0Thermotoga maritima) and in complex with ribosome (2B64Thermus thermophilus).

    Ligand Summary



    References

    Reviews

    References

     

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