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The Open Protein Structure Annotation Network
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1z85

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution. To be published
    Site JCSG
    PDB Id 1z85 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1433,TM1380, 452244, 429687
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.83 Rfactor 0.171
    Waters
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    Solvent Content 56.14

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1z85
    1. The Buccaneer software for automated model building. 1. Tracing protein chains
    K Cowtan - Acta Crystallographica Section D: Biological , 2006 - scripts.iucr.org
     
    2. Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases
    KL Tkaczuk, S Dunin-Horkawicz, E Purta - BMC , 2007 - w09.biomedcentral.com
     
    3. Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family
    GN BASTUREA, KE RUDD, MP DEUTSCHER - Rna, 2006 - rnajournal.cshlp.org
     
    4. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    5. An iterative knowledge_based scoring function for proteinprotein recognition
    SY Huang, X Zou - Proteins: Structure, Function, and , 2008 - Wiley Online Library
     
    6. Substrate specificity and properties of the Escherichia coli 16S rRNA methyltransferase, RsmE
    GN Basturea, MP Deutscher - RNA, 2007 - rnajournal.cshlp.org
     
    7. Insights into the Catalytic Mechanism of 16S rRNA Methyltransferase RsmE (m 3 U1498) from Crystal and Solution Structures
    H Zhang, H Wan, ZQ Gao, Y Wei, WJ Wang - Journal of Molecular , 2012 - Elsevier
     

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    Protein Summary

    The gene TM1380 from Thermotoga maritima encodes a putative 16S ribosomal RNA methyltransferase PF04452 COG1867 EC:2.1.1.32 (based on 92% sequence identity with the RsmE gene from Thermotoga petrophila).  The other name for this enzyme is tRNA (guanine-N(2)-)-methyltransferase.   The enzyme catalyzes the following reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. The genome vicinity of TM1380 includes the seryl-tRNA synthetase serS (TM1379).

    Pre-SCOP classfies 1z85 structure as follows: the 1-66 fragment inside the PUA domain-like superfamily, YggJ N-terminal domain-like family; the C-terminal 68-215 fragment in the alpha/beta knot superfamily, YggJ C-terminal domain-like family. DALI top hits are with the AQ165 protein

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    (Z=20), HI0303 protein
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    (Z=20) and a putative methyltransferase
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    (Z=20).

    Ligand Summary



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