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1wcj

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title NMR Structure of the Conserved Hypothetical Protein Tm0487 from Thermotoga Maritima: Implications for 216 Homologous Duf59 Proteins. Protein Sci. 14 2880 2005
    Site JCSG
    PDB Id 1wcj Target Id
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    Related PDB Ids 1uwd 
    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1208,TM0487, 84914
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method NMR
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    Chains 1

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1wcj
    1. Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: Assessment in two blind tests
    S O_dziej, C Czaplewski, A Liwo - Proceedings of the , 2005 - National Acad Sciences
     
    2. Domain definition and target classification for CASP6
    M Tress, CH Tai, G Wang, I Ezkurdia - PROTEINS: , 2005 - Wiley Online Library
     
    3. Protein structure prediction: combining de novo modeling with sparse experimental data
    D Latek, D Ekonomiuk, A Kolinski - Journal of computational , 2007 - Wiley Online Library
     
    4. Protein structure prediction: The next generation
    MC Prentiss, C Hardin, MP Eastwood - Journal of Chemical , 2006 - ACS Publications
     
    5. NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: Implications for 216 homologous DUF59 proteins
    MS Almeida, T Herrmann, W Peti, IA Wilson - Protein , 2005 - Wiley Online Library
     
    6. Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations
    Y Chiu, J Hwang, J Yang - Journal of computational chemistry, 2008 - Wiley Online Library
     
    7. Backbone resonance assignments of the monomeric DUF59 domain of human Fam96a
    C Mas, KE Chen, IM Brereton, JL Martin - Biomolecular NMR , 2012 - Springer
     

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    Protein Summary

    The TM0487 gene from Thermotoga maritima encodes the NP_228297 protein from the DUF59 family (PF01883). The family also includes PhaH from Pseudomonas putida. PhaH forms a complex with PhaF, PhaG and PhaI, which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid [Ref]. The members of this family may all be components of ring hydroxylating complexes. TM0487 homolog (67% seq. id.) from Thermosipho africanus (YP_002335513) is annotated as metal-sulfur cluster biosynthetic enzyme. TM0487 genomic neighbor, TM0488, is annotated as HemK protein.

    The NMR structure of NP_228297 protein has been deposited in the PDB database (1UWD). SCOP classifies 1uwd in the alpha+beta class, alpha-lytic protease prodomain-like fold, Fe-S cluster assembly domain-like superfamily, PaaD-like family. DALI top hits are with the TTHB138 protein 3cq2 (Z=12), and the rhamnose reductase related protein 2cu6 (Z=11).

    Ligand Summary


    References

    Reviews

    References

     

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