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1vrg

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution. To be published
    Site JCSG
    PDB Id 1vrg Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1226,TM0716, 89312
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 6
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.46 Rfactor 0.154
    Waters
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    Solvent Content 49.58

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1vrg
    1. Template-free detection of macromolecular complexes in cryo electron tomograms
    M Xu, M Beck, F Alber - Bioinformatics, 2011 - Oxford Univ Press
     
    2. QSCOP-BLASTfast retrieval of quantified structural information for protein sequences of unknown structure
    SJ Suhrer, M Gruber, MJ Sippl - Nucleic acids research, 2007 - Oxford Univ Press
     

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    Protein Summary

    The TM0716 gene from Thermotoga maritima encodes the transferase domain of propionyl-CoA carboxylase (PF01039, COG0825, EC 6.4.1.3). The structure adopts a CLP/crotonase fold and shows a strong similarity with a homolog from Propionibacterium freudenreichii (PDB ids: 1on3, 1on9) with a main-chain rmsd of 0.8 Å over 514 residues and a sequence identity of 57%. Similar hits were obtained for homologs from Streptomyces coelicor (PDB id: 1x0u) and Sulfolobus tokodaii (PDB id: 1xnv). For more details on the structure and catalytic mechanism see Diacovich 2004 and Hall 2004.


     

     

    Ligand Summary



    References

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