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The Open Protein Structure Annotation Network
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1vqy

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of hypothetical protein (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution. To be published
    Site JCSG
    PDB Id 1vqy Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1361,NP_396154.1
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.40 Rfactor 0.18633
    Waters
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    Solvent Content 48.44

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1vqy
    1. The Buccaneer software for automated model building. 1. Tracing protein chains
    K Cowtan - Acta Crystallographica Section D: Biological , 2006 - scripts.iucr.org
     
    2. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    3. A discrete view on fold space
    MJ Sippl, SJ Suhrer, M Gruber, M Wiederstein - Bioinformatics, 2008 - Oxford Univ Press
     
    4. Protein structural classification and family identification by multifractal analysis and wavelet spectrum
    SM Zhu, ZG Yu, A Vo - Chinese Physics B, 2011 - iopscience.iop.org
     
    5. A protein in search of function: NIPSNAP1 in mitochondrial branched-chain amino acid metabolon, brain and apoptosis
    M Nautiyal - 2009 - wakespace.lib.wfu.edu
     

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    Protein Summary

    The Atu5224 (NP_396154.1) gene from Agrobacterium tumefaciens encodes a hypothetical protein from the NIPSNAP family PF07978.  The protein belongs to the class of alpha and beta proteins and reveals ferredoxin-like fold type SCOP54861.  The protein is homologous (51% sequence identity) to protein Atu4242 from Agrobacterium tumefaciens 2AP6 1VQS.  The NIPSNAP family proteins have putative roles in vesicular transport [Ref].

     

    Human NIPSNAP proteins act as IAP (inhibitor of apoptosis) antagonists [Ref]. They have also been implicated in Wnt signaling [Ref], another pathway involved in inhibiting apoptosis.

    Ligand Summary



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