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The Open Protein Structure Annotation Network
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1o5l

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171. Protein Sci. 13 3187-3199 2004
    Site JCSG
    PDB Id 1o5l Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1268,TM1171, BV2565C, 2.60.120.10, 89405
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.01 Rfactor 0.19483
    Waters
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    Solvent Content 58.77

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1o5l
    1. On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171
    G Spraggon, D Pantazatos, HE Klock, IA Wilson - Protein , 2004 - Wiley Online Library
     
    2. Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
    SB Conners, EF Mongodin, MR Johnson - FEMS microbiology , 2006 - Wiley Online Library
     
    3. Sequence or structure: using bioinformatics and homology modeling to understand functional relationships in cAMP/cGMP binding domains
    NA LaFranzo, MK Strulson, DM Yanker, LT Dang - Mol. BioSyst., 2010 - xlink.rsc.org
     
    4. Carbohydrate utilization pathway analysis in the hyperthermophile Thermotoga maritima
    SB Conners - 2006 - repository.lib.ncsu.edu
     

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    Protein Summary

    The TM1171 gene from T. maritima encodes the NP_228976 protein, a transcriptional regulator (CrP family)  that belongs to PF00027 (cyclic nucleotide binding domain) and to COG0664 (cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases).

    1o5l has significant structural similarity to other transcriptional regulators from Crp/Fnr  family (PDB structure 2gau ; DALI Z-score 15.0; RMSD 2.9; 25% sequence identity within 122 superimposed residues) and also to other PDB structures (1pf0, 2beo, 1o7f, 1zyb, 2h6b) with double-stranded beta-helix SCOP fold [51181].

    Analysis of the crystallographic packing of 1o5l using the PQS server {Henrick, 1998 #73} indicates that a dimer is the biologically relevant form.

    Ligand Summary



    References

    Reviews

    References

     

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