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1o51

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 A resolution. Proteins 54 810-813 2004
    Site JCSG
    PDB Id 1o51 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1178,TM0021, 83882
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.80 Rfactor 0.184
    Waters
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    Solvent Content 67.37

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1o51
    1. Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga
    M Robinson-Rechavi, A Alibs, A Godzik - Journal of molecular biology, 2006 - Elsevier
     
    2. Crystal structure of a putative PII_like signaling protein (TM0021) from Thermotoga maritima at 2.5 resolution
    R Schwarzenbacher, F von Delft - Proteins: Structure, , 2004 - Wiley Online Library
     
    3. Identification of potential small molecule peptidomimetics similar to motifs in proteins
    I Baran, RS Varekova, L Parthasarathi - Journal of chemical , 2007 - ACS Publications
     
    4. The 2.2 resolution crystal structure of Bacillus cereus Nif3_family protein YqfO reveals a conserved dimetal_binding motif and a regulatory domain
    MH Godsey, G Minasov, L Shuvalova - Protein , 2007 - Wiley Online Library
     
    5. Searching distant homologs of the regulatory ACT domain in phenylalanine hydroxylase
    J Siltberg-Liberles, A Martinez - Amino acids, 2009 - Springer
     
    6. The role of effector molecules in signal transduction by PII proteins
    M Radchenko, M Merrick - Biochemical Society , 2011 - test.biochemsoctrans.org
     
    7. Protein structural classification and family identification by multifractal analysis and wavelet spectrum
    SM Zhu, ZG Yu, A Vo - Chinese Physics B, 2011 - iopscience.iop.org
     
    8. Dimensionality reduction in computational demarcation of protein tertiary structures
    RR Joshi, PR Panigrahi, RN Patil - Journal of Molecular Modeling, 2011 - Springer
     
    9. Applications of Bioinformatics to Protein Structures: How Protein Structure and Bioinformatics Overlap
    GW Han, C Rife, MR Sawaya - Methods in Molecular Biology, 2009 - Springer
     
    10. PII signal transduction proteins: nitrogen regulation and beyond
    LF Huergo, G Chandra - FEMS Microbiology , 2012 - Wiley Online Library
     

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    Protein Summary

    The TM0021 gene of Thermotoga maritima encodes a protein from the DUF190 group (PF02641; COG:COG1993) related to the nitrogen regulatory protein P-II (PFAM:PF00543; PMID:14997579, 16484197). The primary function of the PII family is to regulate the function of proteins involved in nitrogen metabolism in response to the carbon-nitrogen balance in the cell. Genome context analysis indicates a strong functional link (score 0.97) between TM0021 and TM0020, a crcB homolog.

    The TM0021 structure, 1o51, has a ferredoxin-like fold (SCOP sunid:54861) and belongs tothe GlnB-like superfamily, DUF190 family (SCOP sunid:54913). DALI hits are with the UPF0166 protein PH1503

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    (Z=16), the hypothetical protein TTHA0516
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    (Z=11) and the P-II like signaling protein
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    (Z=11).

    Ligand Summary



    References

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