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1o12

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of N-acetylglucosamine-6-phosphate deacetylase (TM0814) from Thermotoga maritima at 2.5 A resolution. To be published
    Site JCSG
    PDB Id 1o12 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1236,TM0814, 85028, 84730
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.64 Rfactor 0.195
    Waters
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    Solvent Content 52.99

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1o12
    1. Predictions without templates: new folds, secondary structure, and contacts in CASP5
    P Aloy, A Stark, C Hadley - : Structure, Function, and , 2003 - Wiley Online Library
     
    2. Assessment of homology_based predictions in CASP5
    A Tramontano, V Morea - Proteins: Structure, Function, and , 2003 - Wiley Online Library
     
    3. Structural and catalytic diversity within the amidohydrolase superfamily
    CM Seibert, FM Raushel - Biochemistry, 2005 - ACS Publications
     
    4. Protein function prediction using local 3D templates
    RA Laskowski, JD Watson, JM Thornton - Journal of Molecular Biology, 2005 - Elsevier
     
    5. Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database
    SCH Pegg, SD Brown, S Ojha, J Seffernick - Biochemistry, 2006 - ACS Publications
     
    6. Predicting protein functional sites with phylogenetic motifs
    D La, B Sutch, DR Livesay - Proteins: Structure, Function, and , 2005 - Wiley Online Library
     
    7. CASP5 target classification
    LN Kinch, Y Qi, TJP Hubbard - : Structure, Function, and , 2003 - Wiley Online Library
     
    8. Shotgun crystallization strategy for structural genomics II: crystallization conditions that produce high resolution structures for T. maritima proteins
    R Page, AM Deacon, SA Lesley - Journal of structural and , 2005 - Springer
     
    9. N-Acetyl-D-glucosamine-6-phosphate deacetylase: substrate activation via a single divalent metal ion
    S Richard, DF Xiang, C Xu, FM Raushel - Biochemistry, 2007 - ACS Publications
     
    10. Structural diversity within the mononuclear and binuclear active sites of N-acetyl-D-glucosamine-6-phosphate deacetylase
    S Richard, S Brown, AA Fedorov, EV Fedorov, C Xu - Biochemistry, 2007 - ACS Publications
     
    11. A fold-recognition approach to loop modeling
    C Levefelt, D Lundh - Journal of molecular modeling, 2006 - Springer
     
    12. A seqlet-based maximum entropy Markov approach for protein secondary structure prediction
    Q Dong, X Wang, L Lin, Y Guan - Science in China Series C: Life Sciences, 2005 - Springer
     
    13. Structural Analysis of N-acetylglucosamine-6-phosphate Deacetylase Apoenzyme from Escherichia coli
    FM Ferreira, G Mendoza-Hernandez - Journal of molecular , 2006 - Elsevier
     
    14. Gene identification and characterization of the pyridoxine degradative enzyme _-(N-acetylaminomethylene) succinic acid amidohydrolase from Mesorhizobium loti
    B Yuan, N Yokochi, Y Yoshikane, K Ohnishi - Journal of nutritional , 2008 - J-STAGE
     
    15. Protein Structure Prediction Using an Augmented Homology Modeling Method: Key Importance of Iterative-Procedures for Obtaining Consistent Quality Models
    S McDonald, S Mylvaganam - Current , 2005 - ingentaconnect.com
     
    16. Studies on the inference of protein binding regions across fold space based on structural similarities
    J Teyra, J Hawkins, H Zhu - : Structure, Function, and , 2011 - Wiley Online Library
     
    17. SCUBA Sources: Massive Galaxies at High Redshifts?
    I Smail - The Mass of Galaxies at Low and High Redshift, 2003 - Springer
     

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    Protein Summary

    The TM0814 gene from Thermotoga maritima encodes N-acetylglucosamine-6-phosphate deacetylase, a member of aminohydrolase family, a subset of metal-dependent hydrolases superfamily PF01979 COG1834.  The enzyme includes the catalytic domain of urease alpha subunit homologous to that from Klebsiella aerogenes [Ref].

    Ligand Summary



    References

    Reviews

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